Ubiquitin System — Tree (Zoysia macrostachya)

Ubiquitin System (Zoysia macrostachya)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(52 genes, 4 categories)
- +JAMM(3 genes)
- +UCH(2 genes)
  - Zma_g17445
  - Zma_g23445
- +ULP(5 genes)
- +USP(42 genes)
+E1(10 genes)
+E2(68 genes, 2 categories)
- +UBC(62 genes)
- +UEV(6 genes)
+E3_activity(700 genes, 5 categories)
+E3_adaptor(524 genes, 1 categories)
- +Cullin_RING(524 genes, 5 categories)
+UBD(181 genes, 5 categories)
- +Alpha-Helix(52 genes, 3 categories)
  - +CUE(3 genes)
  - +UBA(37 genes)
  - +UIM(12 genes)
- +Beta-Prp(78 genes)
- +SH3(1 genes)
  - Zma_g1564
- +UBC-like(46 genes, 1 categories)
  - +UBD_UBC(46 genes)
- +ZnF(4 genes, 2 categories)
  - +NZF(1 genes)
    - Zma_g29252
  - +ZnF_UBP(3 genes)
+ULD(156 genes, 2 categories)
- +UBL(24 genes, 3 categories)
  - +ATG8(4 genes)
  - +NEDD8(18 genes)
  - +SUMO(2 genes)
    - Zma_g9262
    - Zma_g11807
- +UDP(132 genes, 2 categories)
  - +UBQ(107 genes, 2 categories)
    - +UBQ_Other(71 genes)
    - +UBQ_PIM(36 genes)
  - +UFD(25 genes, 2 categories)
    - +PB1(10 genes)
    - +UBX(15 genes)