HalophFGD
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Motif Enrichment
Powered by
MEME Suite
DNA only. Paste or upload FASTA (multiple sequences supported), then choose
MEME
/
DREME
/
AME
and set the parameters. For
AME
, we recommend providing a background set and a motif database.
Sequences (FASTA text)
Fill example
Supports multi-FASTA. If a file is uploaded, the file takes precedence.
Or upload FASTA file
Max 5 MB
Analysis tool
MEME (de novo)
DREME (short motifs)
AME (known motifs)
Reverse complement
MEME parameters
Motifs
Min width
Max width
Model: ZOOPS.
DREME parameters
E-value
Negative set: shuffle by default or upload background below.
AME parameters
E-value report threshold
Motif database
Built-in
Upload .meme
— Select built-in —
Arabidopsis DAPv1 (ArabidopsisDAPv1.meme)
Arabidopsis PBM (2014-02-10) (ArabidopsisPBM_20140210.meme)
JASPAR 2022 CORE (Plants, redundant v2) (JASPAR2022_CORE_plants_redundant_v2.meme)
JASPAR 2022 CORE (All taxa, redundant v2) (JASPAR2022_CORE_redundant_v2.meme)
Provide a background set for more reliable enrichment.
Background
Shuffle input (Markov k)
Upload FASTA
None
k:
Submit
Text ≤ 1000 lines; file ≤ 5 MB
Motif task has been submitted