Ubiquitin System — Tree (Zostera marina)

Ubiquitin System (Zostera marina)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(39 genes, 4 categories)
+E1(6 genes)
+E2(35 genes, 2 categories)
- +UBC(34 genes)
- +UEV(1 genes)
  - Zosma04g26170.v3.1
+E3_activity(347 genes, 4 categories)
+E3_adaptor(324 genes, 1 categories)
- +Cullin_RING(324 genes, 5 categories)
+UBD(128 genes, 4 categories)
+ULD(81 genes, 2 categories)
- +UBL(12 genes, 3 categories)
  - +ATG8(2 genes)
    - Zosma02g05600.v3.1
    - Zosma04g22010.v3.1
  - +NEDD8(9 genes)
  - +SUMO(1 genes)
    - Zosma04g01500.v3.1
- +UDP(69 genes, 2 categories)
  - +UBQ(60 genes, 2 categories)
    - +UBQ_Other(39 genes)
    - +UBQ_PIM(21 genes)
  - +UFD(9 genes, 2 categories)
    - +PB1(2 genes)
      - Zosma05g13460.v3.1
      - Zosma06g24040.v3.1
    - +UBX(7 genes)