Ubiquitin System — Tree (Thalassia testudinum)

Ubiquitin System (Thalassia testudinum)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(30 genes, 4 categories)
+E1(6 genes)
+E2(45 genes, 2 categories)
- +UBC(43 genes)
- +UEV(2 genes)
  - gene.Thate08g06880
  - gene.Thate09g01990
+E3_activity(379 genes, 5 categories)
+E3_adaptor(366 genes, 1 categories)
- +Cullin_RING(366 genes, 5 categories)
+UBD(125 genes, 4 categories)
+ULD(96 genes, 2 categories)
- +UBL(14 genes, 3 categories)
  - +ATG8(3 genes)
  - +NEDD8(9 genes)
  - +SUMO(2 genes)
    - gene.Thate04g02060
    - gene.Thate05g16390
- +UDP(82 genes, 2 categories)
  - +UBQ(70 genes, 2 categories)
    - +UBQ_Other(46 genes)
    - +UBQ_PIM(24 genes)
  - +UFD(12 genes, 2 categories)
    - +PB1(5 genes)
    - +UBX(7 genes)