Ubiquitin System — Tree (Tamarix chinensis)

Ubiquitin System (Tamarix chinensis)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(37 genes, 4 categories)
- +JAMM(2 genes)
  - TC04G2943
  - TC10G2164
- +UCH(1 genes)
  - TC01G3085
- +ULP(3 genes)
- +USP(31 genes)
+E1(7 genes)
+E2(37 genes, 2 categories)
- +UBC(35 genes)
- +UEV(2 genes)
  - TC01G4167
  - TC03G1634
+E3_activity(413 genes, 4 categories)
+E3_adaptor(384 genes, 1 categories)
- +Cullin_RING(384 genes, 5 categories)
+UBD(135 genes, 4 categories)
- +Alpha-Helix(36 genes, 4 categories)
  - +CUE(2 genes)
    - TC02G2586
    - TC06G2000
  - +UBA(27 genes)
  - +UBM(1 genes)
    - TC05G2598
  - +UIM(6 genes)
- +Beta-Prp(64 genes)
- +UBC-like(31 genes, 2 categories)
  - +UBD_UBC(30 genes)
  - +UBD_UEV(1 genes)
    - TC06G0218
- +ZnF(4 genes, 2 categories)
  - +NZF(2 genes)
    - TC03G2488
    - TC07G1633
  - +ZnF_UBP(2 genes)
    - TC08G1442
    - TC10G1283
+ULD(100 genes, 2 categories)
- +UBL(15 genes, 3 categories)
  - +ATG8(3 genes)
  - +NEDD8(10 genes)
  - +SUMO(2 genes)
    - TC03G1361
    - TC06G0390
- +UDP(85 genes, 2 categories)
  - +UBQ(69 genes, 2 categories)
    - +UBQ_Other(47 genes)
    - +UBQ_PIM(22 genes)
  - +UFD(16 genes, 2 categories)
    - +PB1(4 genes)
    - +UBX(12 genes)