Ubiquitin System — Tree (Suaeda glauca)

Ubiquitin System (Suaeda glauca)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

Collapse All | Expand All | Toggle All

+DUB(77 genes, 4 categories)
- +JAMM(10 genes)
- +UCH(2 genes)
  - Sgl52237
  - Sgl57495
- +ULP(4 genes)
- +USP(61 genes)
+E1(14 genes)
+E2(106 genes, 2 categories)
- +UBC(104 genes)
- +UEV(2 genes)
  - Sgl78297
  - Sgl80793
+E3_activity(893 genes, 4 categories)
+E3_adaptor(1077 genes, 1 categories)
- +Cullin_RING(1077 genes, 5 categories)
+UBD(309 genes, 5 categories)
- +Alpha-Helix(74 genes, 4 categories)
  - +CUE(2 genes)
    - Sgl02182
    - Sgl07336
  - +UBA(51 genes)
  - +UBM(2 genes)
    - Sgl23581
    - Sgl28781
  - +UIM(19 genes)
- +Beta-Prp(142 genes)
- +SH3(2 genes)
  - Sgl52503
  - Sgl57767
- +UBC-like(86 genes, 2 categories)
  - +UBD_UBC(84 genes)
  - +UBD_UEV(2 genes)
    - Sgl53128
    - Sgl58403
- +ZnF(5 genes, 1 categories)
  - +ZnF_UBP(5 genes)
+ULD(239 genes, 2 categories)
- +UBL(32 genes, 3 categories)
  - +ATG8(6 genes)
  - +NEDD8(21 genes)
  - +SUMO(5 genes)
- +UDP(207 genes, 2 categories)
  - +UBQ(175 genes, 2 categories)
    - +UBQ_Other(113 genes)
    - +UBQ_PIM(62 genes)
  - +UFD(32 genes, 2 categories)
    - +PB1(14 genes)
    - +UBX(18 genes)