Ubiquitin System — Tree (Sporobolus alterniflorus)

Ubiquitin System (Sporobolus alterniflorus)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(130 genes, 4 categories)
+E1(28 genes)
+E2(146 genes, 2 categories)
- +UBC(139 genes)
- +UEV(7 genes)
+E3_activity(1401 genes, 5 categories)
+E3_adaptor(1191 genes, 1 categories)
- +Cullin_RING(1191 genes, 5 categories)
+UBD(395 genes, 5 categories)
+ULD(299 genes, 2 categories)
- +UBL(45 genes, 3 categories)
- +UDP(254 genes, 2 categories)
  - +UBQ(210 genes, 2 categories)
    - +UBQ_Other(143 genes)
    - +UBQ_PIM(67 genes)
  - +UFD(44 genes, 2 categories)
    - +PB1(17 genes)
    - +UBX(27 genes)