Ubiquitin System — Tree (Solanum pennellii)

Ubiquitin System (Solanum pennellii)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(44 genes, 4 categories)
+E1(8 genes)
+E2(62 genes, 2 categories)
- +UBC(59 genes)
- +UEV(3 genes)
+E3_activity(563 genes, 5 categories)
+E3_adaptor(550 genes, 1 categories)
- +Cullin_RING(550 genes, 5 categories)
+UBD(178 genes, 5 categories)
+ULD(137 genes, 2 categories)
- +UBL(20 genes, 3 categories)
  - +ATG8(5 genes)
  - +NEDD8(11 genes)
  - +SUMO(4 genes)
- +UDP(117 genes, 2 categories)
  - +UBQ(94 genes, 2 categories)
    - +UBQ_Other(64 genes)
    - +UBQ_PIM(30 genes)
  - +UFD(23 genes, 2 categories)
    - +PB1(12 genes)
    - +UBX(11 genes)