Ubiquitin System — Tree (Solanum chilense)

Ubiquitin System (Solanum chilense)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(38 genes, 4 categories)
- +JAMM(3 genes)
- +UCH(1 genes)
  - SOLCI005925200
- +ULP(4 genes)
- +USP(30 genes)
+E1(8 genes)
+E2(45 genes, 2 categories)
- +UBC(42 genes)
- +UEV(3 genes)
+E3_activity(517 genes, 5 categories)
+E3_adaptor(450 genes, 1 categories)
- +Cullin_RING(450 genes, 5 categories)
+UBD(148 genes, 5 categories)
- +Alpha-Helix(42 genes, 3 categories)
- +Beta-Prp(68 genes)
- +SH3(1 genes)
  - SOLCI004243600
- +UBC-like(34 genes, 2 categories)
  - +UBD_UBC(33 genes)
  - +UBD_UEV(1 genes)
    - SOLCI001025000
- +ZnF(3 genes, 2 categories)
  - +NZF(2 genes)
    - SOLCI001785300
    - SOLCI007390700
  - +ZnF_UBP(1 genes)
    - SOLCI003056200
+ULD(118 genes, 2 categories)
- +UBL(17 genes, 3 categories)
  - +ATG8(5 genes)
  - +NEDD8(8 genes)
  - +SUMO(4 genes)
- +UDP(101 genes, 2 categories)
  - +UBQ(80 genes, 2 categories)
    - +UBQ_Other(54 genes)
    - +UBQ_PIM(26 genes)
  - +UFD(21 genes, 2 categories)
    - +PB1(10 genes)
    - +UBX(11 genes)