Ubiquitin System — Tree (Schrenkiella parvula)

Ubiquitin System (Schrenkiella parvula)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(45 genes, 4 categories)
+E1(9 genes)
+E2(46 genes, 2 categories)
- +UBC(43 genes)
- +UEV(3 genes)
+E3_activity(529 genes, 4 categories)
+E3_adaptor(473 genes, 1 categories)
- +Cullin_RING(473 genes, 5 categories)
+UBD(168 genes, 4 categories)
+ULD(136 genes, 2 categories)
- +UBL(21 genes, 3 categories)
  - +ATG8(7 genes)
  - +NEDD8(12 genes)
  - +SUMO(2 genes)
    - Sp6g17100.v2.2
    - Sp7g24800.v2.2
- +UDP(115 genes, 2 categories)
  - +UBQ(92 genes, 2 categories)
    - +UBQ_Other(60 genes)
    - +UBQ_PIM(32 genes)
  - +UFD(23 genes, 3 categories)
    - +PB1(8 genes)
    - +RAWUL(1 genes)
      - Sp2g09100.v2.2
    - +UBX(14 genes)