Ubiquitin System — Tree (Salicornia bigelovii)

Ubiquitin System (Salicornia bigelovii)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(66 genes, 4 categories)
+E1(12 genes)
+E2(63 genes, 2 categories)
- +UBC(61 genes)
- +UEV(2 genes)
  - Sbi_jg51118
  - Sbi_jg60242
+E3_activity(700 genes, 4 categories)
+E3_adaptor(750 genes, 1 categories)
- +Cullin_RING(750 genes, 5 categories)
+UBD(230 genes, 5 categories)
- +Alpha-Helix(63 genes, 4 categories)
- +Beta-Prp(110 genes)
- +SH3(1 genes)
  - Sbi_jg8147
- +UBC-like(50 genes, 2 categories)
  - +UBD_UBC(48 genes)
  - +UBD_UEV(2 genes)
    - Sbi_jg13966
    - Sbi_jg51972
- +ZnF(6 genes, 2 categories)
  - +NZF(2 genes)
    - Sbi_jg26803
    - Sbi_jg33766
  - +ZnF_UBP(4 genes)
+ULD(179 genes, 2 categories)
- +UBL(26 genes, 3 categories)
  - +ATG8(5 genes)
  - +NEDD8(17 genes)
  - +SUMO(4 genes)
- +UDP(153 genes, 2 categories)
  - +UBQ(126 genes, 2 categories)
    - +UBQ_Other(85 genes)
    - +UBQ_PIM(41 genes)
  - +UFD(27 genes, 2 categories)
    - +PB1(11 genes)
    - +UBX(16 genes)