Ubiquitin System — Tree (Rhizophora mangle)

Ubiquitin System (Rhizophora mangle)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(37 genes, 4 categories)
+E1(7 genes)
+E2(55 genes, 2 categories)
- +UBC(52 genes)
- +UEV(3 genes)
+E3_activity(448 genes, 5 categories)
+E3_adaptor(436 genes, 1 categories)
- +Cullin_RING(436 genes, 5 categories)
+UBD(148 genes, 4 categories)
+ULD(118 genes, 2 categories)
- +UBL(21 genes, 3 categories)
  - +ATG8(4 genes)
  - +NEDD8(13 genes)
  - +SUMO(4 genes)
- +UDP(97 genes, 2 categories)
  - +UBQ(82 genes, 2 categories)
    - +UBQ_Other(55 genes)
    - +UBQ_PIM(27 genes)
  - +UFD(15 genes, 2 categories)
    - +PB1(6 genes)
    - +UBX(9 genes)