Ubiquitin System — Tree (Rhizophora apiculata)

Ubiquitin System (Rhizophora apiculata)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(40 genes, 4 categories)
+E1(7 genes)
+E2(62 genes, 2 categories)
- +UBC(59 genes)
- +UEV(3 genes)
+E3_activity(511 genes, 5 categories)
+E3_adaptor(475 genes, 1 categories)
- +Cullin_RING(475 genes, 5 categories)
+UBD(168 genes, 4 categories)
+ULD(125 genes, 2 categories)
- +UBL(21 genes, 3 categories)
  - +ATG8(4 genes)
  - +NEDD8(13 genes)
  - +SUMO(4 genes)
- +UDP(104 genes, 2 categories)
  - +UBQ(86 genes, 2 categories)
    - +UBQ_Other(58 genes)
    - +UBQ_PIM(28 genes)
  - +UFD(18 genes, 2 categories)
    - +PB1(9 genes)
    - +UBX(9 genes)