Ubiquitin System — Tree (Reaumuria soongarica)

Ubiquitin System (Reaumuria soongarica)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(40 genes, 4 categories)
- +JAMM(2 genes)
  - gene_7350
  - gene_13360
- +UCH(1 genes)
  - STRG.23317_chr05_+
- +ULP(4 genes)
- +USP(33 genes)
+E1(7 genes)
+E2(43 genes, 2 categories)
- +UBC(40 genes)
- +UEV(3 genes)
+E3_activity(388 genes, 4 categories)
+E3_adaptor(387 genes, 1 categories)
- +Cullin_RING(387 genes, 5 categories)
+UBD(153 genes, 4 categories)
- +Alpha-Helix(44 genes, 4 categories)
  - +CUE(2 genes)
    - gene_4096
    - STRG.27479_chr04_+
  - +UBA(31 genes)
  - +UBM(1 genes)
    - gene_13076
  - +UIM(10 genes)
- +Beta-Prp(74 genes)
- +UBC-like(32 genes, 2 categories)
  - +UBD_UBC(31 genes)
  - +UBD_UEV(1 genes)
    - gene_14778
- +ZnF(3 genes, 2 categories)
  - +NZF(1 genes)
    - STRG.18470_chr09_-
  - +ZnF_UBP(2 genes)
    - gene_8982
    - gene_10968
+ULD(127 genes, 2 categories)
- +UBL(20 genes, 3 categories)
  - +ATG8(5 genes)
  - +NEDD8(13 genes)
  - +SUMO(2 genes)
    - gene_10011
    - gene_14638
- +UDP(107 genes, 2 categories)
  - +UBQ(90 genes, 2 categories)
    - +UBQ_Other(58 genes)
    - +UBQ_PIM(32 genes)
  - +UFD(17 genes, 2 categories)
    - +PB1(7 genes)
    - +UBX(10 genes)