Ubiquitin System — Tree (Posidonia oceanica)

Ubiquitin System (Posidonia oceanica)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(33 genes, 4 categories)
+E1(6 genes)
+E2(42 genes, 2 categories)
- +UBC(40 genes)
- +UEV(2 genes)
  - gene.Posoc02g17300
  - gene.Posoc05g16380
+E3_activity(364 genes, 4 categories)
+E3_adaptor(382 genes, 1 categories)
- +Cullin_RING(382 genes, 5 categories)
+UBD(134 genes, 4 categories)
+ULD(93 genes, 2 categories)
- +UBL(14 genes, 3 categories)
  - +ATG8(3 genes)
  - +NEDD8(9 genes)
  - +SUMO(2 genes)
    - gene.Posoc01g05980
    - gene.Posoc05g04270
- +UDP(79 genes, 2 categories)
  - +UBQ(66 genes, 2 categories)
    - +UBQ_Other(45 genes)
    - +UBQ_PIM(21 genes)
  - +UFD(13 genes, 2 categories)
    - +PB1(4 genes)
    - +UBX(9 genes)