Ubiquitin System — Tree (Portulaca oleracea)

Ubiquitin System (Portulaca oleracea)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(66 genes, 4 categories)
+E1(13 genes)
+E2(86 genes, 2 categories)
- +UBC(82 genes)
- +UEV(4 genes)
+E3_activity(826 genes, 5 categories)
+E3_adaptor(891 genes, 1 categories)
- +Cullin_RING(891 genes, 5 categories)
+UBD(278 genes, 4 categories)
+ULD(209 genes, 2 categories)
- +UBL(33 genes, 3 categories)
- +UDP(176 genes, 2 categories)
  - +UBQ(142 genes, 2 categories)
    - +UBQ_Other(93 genes)
    - +UBQ_PIM(49 genes)
  - +UFD(34 genes, 2 categories)
    - +PB1(14 genes)
    - +UBX(20 genes)