Ubiquitin System — Tree (Plantago ovata)

Ubiquitin System (Plantago ovata)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(45 genes, 4 categories)
- +JAMM(4 genes)
- +UCH(1 genes)
  - Pov_00036702
- +ULP(3 genes)
- +USP(37 genes)
+E1(7 genes)
+E2(36 genes, 2 categories)
- +UBC(35 genes)
- +UEV(1 genes)
  - Pov_00025541
+E3_activity(502 genes, 4 categories)
+E3_adaptor(635 genes, 1 categories)
- +Cullin_RING(635 genes, 5 categories)
+UBD(146 genes, 3 categories)
- +Alpha-Helix(43 genes, 4 categories)
  - +CUE(1 genes)
    - Pov_00012440
  - +UBA(34 genes)
  - +UBM(1 genes)
    - Pov_00037932
  - +UIM(7 genes)
- +Beta-Prp(76 genes)
- +UBC-like(27 genes, 2 categories)
  - +UBD_UBC(26 genes)
  - +UBD_UEV(1 genes)
    - Pov_00038753
+ULD(164 genes, 2 categories)
- +UBL(32 genes, 3 categories)
  - +ATG8(2 genes)
    - Pov_00008820
    - Pov_00039041
  - +NEDD8(24 genes)
  - +SUMO(6 genes)
- +UDP(132 genes, 2 categories)
  - +UBQ(114 genes, 2 categories)
    - +UBQ_Other(69 genes)
    - +UBQ_PIM(45 genes)
  - +UFD(18 genes, 2 categories)
    - +PB1(7 genes)
    - +UBX(11 genes)