Ubiquitin System — Tree (Phoenix dactylifera)

Ubiquitin System (Phoenix dactylifera)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(57 genes, 4 categories)
+E1(8 genes)
+E2(76 genes, 2 categories)
- +UBC(68 genes)
- +UEV(8 genes)
+E3_activity(620 genes, 5 categories)
+E3_adaptor(542 genes, 1 categories)
- +Cullin_RING(542 genes, 5 categories)
+UBD(225 genes, 5 categories)
+ULD(152 genes, 2 categories)
- +UBL(24 genes, 3 categories)
- +UDP(128 genes, 2 categories)
  - +UBQ(102 genes, 2 categories)
    - +UBQ_Other(68 genes)
    - +UBQ_PIM(34 genes)
  - +UFD(26 genes, 2 categories)
    - +PB1(9 genes)
    - +UBX(17 genes)