Ubiquitin System — Tree (Oryza coarctata)

Ubiquitin System (Oryza coarctata)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(83 genes, 4 categories)
+E1(12 genes)
+E2(87 genes, 2 categories)
- +UBC(78 genes)
- +UEV(9 genes)
+E3_activity(857 genes, 5 categories)
+E3_adaptor(766 genes, 1 categories)
- +Cullin_RING(766 genes, 5 categories)
+UBD(230 genes, 5 categories)
- +Alpha-Helix(59 genes, 4 categories)
- +Beta-Prp(109 genes)
- +SH3(1 genes)
  - Oco05G009130
- +UBC-like(56 genes, 1 categories)
  - +UBD_UBC(56 genes)
- +ZnF(5 genes, 3 categories)
  - +NZF(1 genes)
    - Oco11G004210
  - +ZnF_A20(1 genes)
    - Oco15G009180
  - +ZnF_UBP(3 genes)
+ULD(194 genes, 2 categories)
- +UBL(25 genes, 3 categories)
  - +ATG8(6 genes)
  - +NEDD8(16 genes)
  - +SUMO(3 genes)
- +UDP(169 genes, 2 categories)
  - +UBQ(141 genes, 2 categories)
    - +UBQ_Other(95 genes)
    - +UBQ_PIM(46 genes)
  - +UFD(28 genes, 2 categories)
    - +PB1(11 genes)
    - +UBX(17 genes)