Ubiquitin System — Tree (Mesembryanthemum crystallinum)

Ubiquitin System (Mesembryanthemum crystallinum)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(31 genes, 4 categories)
- +JAMM(2 genes)
  - gene_13106
  - gene_14001
- +UCH(1 genes)
  - gene_5417
- +ULP(2 genes)
  - gene_18789
  - gene_23371
- +USP(26 genes)
+E1(6 genes)
+E2(36 genes, 2 categories)
- +UBC(34 genes)
- +UEV(2 genes)
  - gene_6851
  - gene_20358
+E3_activity(383 genes, 5 categories)
+E3_adaptor(554 genes, 1 categories)
- +Cullin_RING(554 genes, 5 categories)
+UBD(136 genes, 4 categories)
- +Alpha-Helix(33 genes, 4 categories)
  - +CUE(1 genes)
    - gene_16036
  - +UBA(24 genes)
  - +UBM(1 genes)
    - gene_12129
  - +UIM(7 genes)
- +Beta-Prp(69 genes)
- +UBC-like(30 genes, 2 categories)
  - +UBD_UBC(29 genes)
  - +UBD_UEV(1 genes)
    - gene_8515
- +ZnF(4 genes, 3 categories)
  - +NZF(1 genes)
    - gene_86
  - +ZnF_A20(1 genes)
    - gene_13305
  - +ZnF_UBP(2 genes)
    - gene_8965
    - gene_26234
+ULD(113 genes, 2 categories)
- +UBL(17 genes, 3 categories)
  - +ATG8(2 genes)
    - gene_91
    - gene_1954
  - +NEDD8(12 genes)
  - +SUMO(3 genes)
- +UDP(96 genes, 2 categories)
  - +UBQ(82 genes, 2 categories)
    - +UBQ_Other(49 genes)
    - +UBQ_PIM(33 genes)
  - +UFD(14 genes, 2 categories)
    - +PB1(6 genes)
    - +UBX(8 genes)