Ubiquitin System — Tree (Limonium bicolor)

Ubiquitin System (Limonium bicolor)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(56 genes, 4 categories)
- +JAMM(3 genes)
- +UCH(2 genes)
  - Lb2G08135
  - Lb4G24670
- +ULP(5 genes)
- +USP(46 genes)
+E1(10 genes)
+E2(56 genes, 2 categories)
- +UBC(54 genes)
- +UEV(2 genes)
  - Lb2G09645
  - Lb2G09652
+E3_activity(366 genes, 4 categories)
+E3_adaptor(474 genes, 1 categories)
- +Cullin_RING(474 genes, 5 categories)
+UBD(157 genes, 4 categories)
- +Alpha-Helix(35 genes, 4 categories)
  - +CUE(2 genes)
    - Lb0G37600
    - Lb6G32054
  - +UBA(19 genes)
  - +UBM(1 genes)
    - Lb2G11873
  - +UIM(13 genes)
- +Beta-Prp(75 genes)
- +UBC-like(44 genes, 1 categories)
  - +UBD_UBC(44 genes)
- +ZnF(3 genes, 2 categories)
  - +NZF(1 genes)
    - Lb7G34403
  - +ZnF_UBP(2 genes)
    - Lb6G31727
    - Lb7G32914
+ULD(117 genes, 2 categories)
- +UBL(18 genes, 3 categories)
  - +ATG8(6 genes)
  - +NEDD8(7 genes)
  - +SUMO(5 genes)
- +UDP(99 genes, 2 categories)
  - +UBQ(81 genes, 2 categories)
    - +UBQ_Other(57 genes)
    - +UBQ_PIM(24 genes)
  - +UFD(18 genes, 2 categories)
    - +PB1(9 genes)
    - +UBX(9 genes)