Ubiquitin System — Tree (Kandelia candel)

Ubiquitin System (Kandelia candel)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(40 genes, 4 categories)
+E1(7 genes)
+E2(61 genes, 2 categories)
- +UBC(58 genes)
- +UEV(3 genes)
+E3_activity(502 genes, 5 categories)
+E3_adaptor(438 genes, 1 categories)
- +Cullin_RING(438 genes, 5 categories)
+UBD(175 genes, 5 categories)
+ULD(132 genes, 2 categories)
- +UBL(22 genes, 3 categories)
- +UDP(110 genes, 2 categories)
  - +UBQ(90 genes, 2 categories)
    - +UBQ_Other(59 genes)
    - +UBQ_PIM(31 genes)
  - +UFD(20 genes, 2 categories)
    - +PB1(11 genes)
    - +UBX(9 genes)