Ubiquitin System — Tree (Hibiscus hamabo)

Ubiquitin System (Hibiscus hamabo)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(21 genes, 3 categories)
- +JAMM(1 genes)
  - nbisL1-mrna-1276
- +ULP(2 genes)
  - nbisL1-mrna-4157
  - nbisL1-mrna-8786
- +USP(18 genes)
+E1(1 genes)
- nbisL1-mrna-11494
+E2(17 genes, 1 categories)
- +UBC(17 genes)
+E3_activity(239 genes, 4 categories)
+E3_adaptor(191 genes, 1 categories)
- +Cullin_RING(191 genes, 4 categories)
+UBD(59 genes, 3 categories)
- +Alpha-Helix(21 genes, 2 categories)
  - +UBA(17 genes)
  - +UIM(4 genes)
- +Beta-Prp(23 genes)
- +UBC-like(15 genes, 2 categories)
  - +UBD_UBC(14 genes)
  - +UBD_UEV(1 genes)
    - nbisL1-mrna-3707
+ULD(67 genes, 2 categories)
- +UBL(9 genes, 3 categories)
  - +ATG8(3 genes)
  - +NEDD8(5 genes)
  - +SUMO(1 genes)
    - nbisL1-mrna-9848
- +UDP(58 genes, 2 categories)
  - +UBQ(46 genes, 2 categories)
    - +UBQ_Other(32 genes)
    - +UBQ_PIM(14 genes)
  - +UFD(12 genes, 2 categories)
    - +PB1(9 genes)
    - +UBX(3 genes)