Ubiquitin System — Tree (Flaveria trinervia)

Ubiquitin System (Flaveria trinervia)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(50 genes, 4 categories)
- +JAMM(4 genes)
- +UCH(1 genes)
  - Ftri9G11165
- +ULP(6 genes)
- +USP(39 genes)
+E1(6 genes)
+E2(55 genes, 2 categories)
- +UBC(51 genes)
- +UEV(4 genes)
+E3_activity(639 genes, 4 categories)
+E3_adaptor(527 genes, 1 categories)
- +Cullin_RING(527 genes, 5 categories)
+UBD(177 genes, 5 categories)
- +Alpha-Helix(46 genes, 4 categories)
  - +CUE(1 genes)
    - Ftri6G26303
  - +UBA(35 genes)
  - +UBM(1 genes)
    - Ftri7G04341
  - +UIM(9 genes)
- +Beta-Prp(84 genes)
- +SH3(1 genes)
  - Ftri10G18432
- +UBC-like(44 genes, 2 categories)
  - +UBD_UBC(43 genes)
  - +UBD_UEV(1 genes)
    - Ftri11G17032
- +ZnF(2 genes, 2 categories)
  - +NZF(1 genes)
    - Ftri18G22915
  - +ZnF_UBP(1 genes)
    - Ftri15G32698
+ULD(154 genes, 2 categories)
- +UBL(25 genes, 3 categories)
  - +ATG8(4 genes)
  - +NEDD8(16 genes)
  - +SUMO(5 genes)
- +UDP(129 genes, 2 categories)
  - +UBQ(110 genes, 2 categories)
    - +UBQ_Other(72 genes)
    - +UBQ_PIM(38 genes)
  - +UFD(19 genes, 2 categories)
    - +PB1(5 genes)
    - +UBX(14 genes)