Ubiquitin System — Tree (Echinochloa crus-galli)

Ubiquitin System (Echinochloa crus-galli)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(139 genes, 4 categories)
+E1(27 genes)
+E2(169 genes, 2 categories)
- +UBC(156 genes)
- +UEV(13 genes)
+E3_activity(1580 genes, 5 categories)
+E3_adaptor(1585 genes, 1 categories)
- +Cullin_RING(1585 genes, 5 categories)
+UBD(431 genes, 4 categories)
+ULD(495 genes, 2 categories)
- +UBL(85 genes, 3 categories)
- +UDP(410 genes, 2 categories)
  - +UBQ(363 genes, 2 categories)
    - +UBQ_Other(228 genes)
    - +UBQ_PIM(135 genes)
  - +UFD(47 genes, 2 categories)
    - +PB1(22 genes)
    - +UBX(25 genes)