Ubiquitin System — Tree (Chenopodium album)

Ubiquitin System (Chenopodium album)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(57 genes, 4 categories)
+E1(12 genes)
+E2(72 genes, 2 categories)
- +UBC(69 genes)
- +UEV(3 genes)
+E3_activity(717 genes, 5 categories)
+E3_adaptor(806 genes, 1 categories)
- +Cullin_RING(806 genes, 5 categories)
+UBD(231 genes, 5 categories)
+ULD(172 genes, 2 categories)
- +UBL(25 genes, 3 categories)
- +UDP(147 genes, 2 categories)
  - +UBQ(116 genes, 2 categories)
    - +UBQ_Other(75 genes)
    - +UBQ_PIM(41 genes)
  - +UFD(31 genes, 2 categories)
    - +PB1(15 genes)
    - +UBX(16 genes)