Ubiquitin System — Tree (Ceriops zippeliana)

Ubiquitin System (Ceriops zippeliana)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(34 genes, 3 categories)
+E1(7 genes)
+E2(45 genes, 2 categories)
- +UBC(43 genes)
- +UEV(2 genes)
  - nbisL1-mrna-10137
  - nbisL1-mrna-17555
+E3_activity(415 genes, 4 categories)
+E3_adaptor(396 genes, 1 categories)
- +Cullin_RING(396 genes, 5 categories)
+UBD(132 genes, 4 categories)
+ULD(116 genes, 2 categories)
- +UBL(19 genes, 3 categories)
  - +ATG8(4 genes)
  - +NEDD8(12 genes)
  - +SUMO(3 genes)
- +UDP(97 genes, 2 categories)
  - +UBQ(82 genes, 2 categories)
    - +UBQ_Other(53 genes)
    - +UBQ_PIM(29 genes)
  - +UFD(15 genes, 2 categories)
    - +PB1(6 genes)
    - +UBX(9 genes)