Ubiquitin System — Tree (Ceriops tagal)

Ubiquitin System (Ceriops tagal)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(40 genes, 4 categories)
+E1(7 genes)
+E2(54 genes, 2 categories)
- +UBC(51 genes)
- +UEV(3 genes)
+E3_activity(440 genes, 3 categories)
+E3_adaptor(433 genes, 1 categories)
- +Cullin_RING(433 genes, 5 categories)
+UBD(150 genes, 4 categories)
+ULD(107 genes, 2 categories)
- +UBL(17 genes, 3 categories)
  - +ATG8(5 genes)
  - +NEDD8(9 genes)
  - +SUMO(3 genes)
- +UDP(90 genes, 2 categories)
  - +UBQ(73 genes, 2 categories)
    - +UBQ_Other(49 genes)
    - +UBQ_PIM(24 genes)
  - +UFD(17 genes, 2 categories)
    - +PB1(8 genes)
    - +UBX(9 genes)