Ubiquitin System — Tree (Casuarina glauca)

Ubiquitin System (Casuarina glauca)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(38 genes, 4 categories)
- +JAMM(1 genes)
  - Cgl09G1181
- +UCH(1 genes)
  - Cgl03G2636
- +ULP(1 genes)
  - Cgl09G1237
- +USP(35 genes)
+E1(6 genes)
+E2(42 genes, 2 categories)
- +UBC(40 genes)
- +UEV(2 genes)
  - Cgl04G0847
  - Cgl09G0911
+E3_activity(393 genes, 4 categories)
+E3_adaptor(422 genes, 1 categories)
- +Cullin_RING(422 genes, 5 categories)
+UBD(137 genes, 5 categories)
- +Alpha-Helix(35 genes, 4 categories)
  - +CUE(3 genes)
  - +UBA(24 genes)
  - +UBM(1 genes)
    - Cgl01G1657
  - +UIM(7 genes)
- +Beta-Prp(63 genes)
- +SH3(1 genes)
  - Cgl07G1581
- +UBC-like(35 genes, 2 categories)
  - +UBD_UBC(34 genes)
  - +UBD_UEV(1 genes)
    - Cgl05G0947
- +ZnF(3 genes, 2 categories)
  - +NZF(1 genes)
    - Cgl01G1633
  - +ZnF_UBP(2 genes)
    - Cgl02G0390
    - Cgl06G0617
+ULD(69 genes, 2 categories)
- +UBL(9 genes, 2 categories)
  - +ATG8(6 genes)
  - +SUMO(3 genes)
- +UDP(60 genes, 2 categories)
  - +UBQ(45 genes, 2 categories)
    - +UBQ_Other(33 genes)
    - +UBQ_PIM(12 genes)
  - +UFD(15 genes, 2 categories)
    - +PB1(7 genes)
    - +UBX(8 genes)