Ubiquitin System — Tree (Casuarina equisetifolia)

Ubiquitin System (Casuarina equisetifolia)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(35 genes, 4 categories)
- +JAMM(1 genes)
  - Ceq09G1088
- +UCH(2 genes)
  - Ceq03G0030
  - Ceq03G2497
- +ULP(3 genes)
- +USP(29 genes)
+E1(6 genes)
+E2(40 genes, 2 categories)
- +UBC(38 genes)
- +UEV(2 genes)
  - Ceq04G0743
  - Ceq09G0840
+E3_activity(367 genes, 4 categories)
+E3_adaptor(397 genes, 1 categories)
- +Cullin_RING(397 genes, 5 categories)
+UBD(136 genes, 5 categories)
- +Alpha-Helix(32 genes, 4 categories)
  - +CUE(3 genes)
  - +UBA(21 genes)
  - +UBM(1 genes)
    - Ceq01G1493
  - +UIM(7 genes)
- +Beta-Prp(65 genes)
- +SH3(1 genes)
  - Ceq07G1502
- +UBC-like(34 genes, 2 categories)
  - +UBD_UBC(33 genes)
  - +UBD_UEV(1 genes)
    - Ceq05G0946
- +ZnF(4 genes, 3 categories)
  - +NZF(1 genes)
    - Ceq01G1468
  - +ZnF_A20(1 genes)
    - Ceq05G0492
  - +ZnF_UBP(2 genes)
    - Ceq02G0369
    - Ceq06G0597
+ULD(63 genes, 2 categories)
- +UBL(6 genes, 2 categories)
  - +ATG8(3 genes)
  - +SUMO(3 genes)
- +UDP(57 genes, 2 categories)
  - +UBQ(42 genes, 2 categories)
    - +UBQ_Other(31 genes)
    - +UBQ_PIM(11 genes)
  - +UFD(15 genes, 2 categories)
    - +PB1(7 genes)
    - +UBX(8 genes)