Ubiquitin System — Tree (Carallia pectinifolia)

Ubiquitin System (Carallia pectinifolia)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(41 genes, 4 categories)
+E1(6 genes)
+E2(70 genes, 2 categories)
- +UBC(67 genes)
- +UEV(3 genes)
+E3_activity(564 genes, 5 categories)
+E3_adaptor(567 genes, 1 categories)
- +Cullin_RING(567 genes, 5 categories)
+UBD(179 genes, 4 categories)
+ULD(143 genes, 2 categories)
- +UBL(26 genes, 3 categories)
- +UDP(117 genes, 2 categories)
  - +UBQ(91 genes, 2 categories)
    - +UBQ_Other(62 genes)
    - +UBQ_PIM(29 genes)
  - +UFD(26 genes, 2 categories)
    - +PB1(13 genes)
    - +UBX(13 genes)