Ubiquitin System — Tree (Bruguiera sexangula)

Ubiquitin System (Bruguiera sexangula)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(40 genes, 4 categories)
+E1(9 genes)
+E2(56 genes, 2 categories)
- +UBC(54 genes)
- +UEV(2 genes)
  - evm.TU.Scaffold_1_RagTag.1363
  - evm.TU.Scaffold_2_RagTag.1037
+E3_activity(510 genes, 4 categories)
+E3_adaptor(458 genes, 1 categories)
- +Cullin_RING(458 genes, 5 categories)
+UBD(174 genes, 4 categories)
+ULD(126 genes, 2 categories)
- +UBL(20 genes, 3 categories)
- +UDP(106 genes, 2 categories)
  - +UBQ(86 genes, 2 categories)
    - +UBQ_Other(57 genes)
    - +UBQ_PIM(29 genes)
  - +UFD(20 genes, 2 categories)
    - +PB1(10 genes)
    - +UBX(10 genes)