Ubiquitin System — Tree (Brassica nigra)

Ubiquitin System (Brassica nigra)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

Collapse All | Expand All | Toggle All

+DUB(67 genes, 4 categories)
+E1(13 genes)
+E2(92 genes, 2 categories)
- +UBC(88 genes)
- +UEV(4 genes)
+E3_activity(861 genes, 4 categories)
+E3_adaptor(1005 genes, 1 categories)
- +Cullin_RING(1005 genes, 5 categories)
+UBD(271 genes, 4 categories)
+ULD(268 genes, 2 categories)
- +UBL(44 genes, 3 categories)
- +UDP(224 genes, 2 categories)
  - +UBQ(187 genes, 2 categories)
    - +UBQ_Other(120 genes)
    - +UBQ_PIM(67 genes)
  - +UFD(37 genes, 2 categories)
    - +PB1(13 genes)
    - +UBX(24 genes)