Ubiquitin System — Tree (Beta vulgaris)

Ubiquitin System (Beta vulgaris)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(24 genes, 4 categories)
- +JAMM(2 genes)
  - KMT16500
  - KMT17810
- +UCH(1 genes)
  - KMT11905
- +ULP(1 genes)
  - KMT19712
- +USP(20 genes)
+E1(5 genes)
+E2(31 genes, 2 categories)
- +UBC(30 genes)
- +UEV(1 genes)
  - KMT04920
+E3_activity(289 genes, 3 categories)
- +HECT(6 genes)
- +RBR(0 genes, 1 categories)
- +RING(279 genes, 3 categories)
+E3_adaptor(304 genes, 1 categories)
- +Cullin_RING(304 genes, 5 categories)
  - +APC_C(4 genes, 1 categories)
    - +CDC20(4 genes)
  - +BCR(27 genes, 1 categories)
    - +BTB(27 genes)
  - +Cullin(3 genes)
  - +DCX(158 genes, 2 categories)
    - +DDB1(1 genes)
      - KMT03941
    - +DWD(157 genes)
  - +SCF(112 genes, 2 categories)
    - +F-box(108 genes)
    - +SKP1(4 genes)
+UBD(104 genes, 4 categories)
- +Alpha-Helix(23 genes, 3 categories)
  - +UBA(18 genes)
  - +UBM(1 genes)
    - KMT12984
  - +UIM(4 genes)
- +Beta-Prp(55 genes)
- +UBC-like(23 genes, 2 categories)
  - +UBD_UBC(22 genes)
  - +UBD_UEV(1 genes)
    - KMT17198
- +ZnF(3 genes, 2 categories)
  - +NZF(2 genes)
    - KMT04148
    - KMT12925
  - +ZnF_UBP(1 genes)
    - KMT02813
+ULD(70 genes, 2 categories)
- +UBL(6 genes, 3 categories)
  - +ATG8(1 genes)
    - KMT04164
  - +NEDD8(3 genes)
  - +SUMO(2 genes)
    - KMT05641
    - KMT12789
- +UDP(64 genes, 2 categories)
  - +UBQ(51 genes, 2 categories)
    - +UBQ_Other(34 genes)
    - +UBQ_PIM(17 genes)
  - +UFD(13 genes, 2 categories)
    - +PB1(6 genes)
    - +UBX(7 genes)