Ubiquitin System — Tree (Avicennia marina)

Ubiquitin System (Avicennia marina)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(46 genes, 4 categories)
- +JAMM(3 genes)
- +UCH(1 genes)
  - jg8438
- +ULP(7 genes)
- +USP(35 genes)
+E1(7 genes)
+E2(76 genes, 2 categories)
- +UBC(69 genes)
- +UEV(7 genes)
+E3_activity(651 genes, 5 categories)
- +DCUN1(2 genes)
  - jg24709
  - jg38514
- +HECT(8 genes)
- +N-recognin(1 genes, 1 categories)
  - +UBR-box(1 genes)
    - jg32551
- +RBR(0 genes, 1 categories)
- +RING(636 genes, 3 categories)
+E3_adaptor(565 genes, 1 categories)
- +Cullin_RING(565 genes, 5 categories)
  - +APC_C(7 genes, 1 categories)
    - +CDC20(7 genes)
  - +BCR(58 genes, 1 categories)
    - +BTB(58 genes)
  - +Cullin(8 genes)
  - +DCX(325 genes, 2 categories)
    - +DDB1(2 genes)
      - jg20807
      - jg38772
    - +DWD(323 genes)
  - +SCF(167 genes, 2 categories)
    - +F-box(162 genes)
    - +SKP1(5 genes)
+UBD(201 genes, 4 categories)
- +Alpha-Helix(50 genes, 4 categories)
  - +CUE(2 genes)
    - jg2414
    - jg14106
  - +UBA(35 genes)
  - +UBM(1 genes)
    - jg21614
  - +UIM(12 genes)
- +Beta-Prp(93 genes)
- +UBC-like(57 genes, 2 categories)
  - +UBD_UBC(55 genes)
  - +UBD_UEV(2 genes)
    - jg9955
    - jg34211
- +ZnF(1 genes, 1 categories)
  - +ZnF_UBP(1 genes)
    - jg13483
+ULD(152 genes, 2 categories)
- +UBL(22 genes, 3 categories)
  - +ATG8(4 genes)
  - +NEDD8(15 genes)
  - +SUMO(3 genes)
- +UDP(130 genes, 2 categories)
  - +UBQ(104 genes, 2 categories)
    - +UBQ_Other(69 genes)
    - +UBQ_PIM(35 genes)
  - +UFD(26 genes, 2 categories)
    - +PB1(14 genes)
    - +UBX(12 genes)