Ubiquitin System — Tree (Asparagus officinalis)

Ubiquitin System (Asparagus officinalis)

Method. Proteins were annotated using UUCD-derived HMM profiles and family-specific score cutoffs with HMMER (hmmsearch).

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+DUB(40 genes, 4 categories)
+E1(6 genes)
+E2(50 genes, 2 categories)
- +UBC(46 genes)
- +UEV(4 genes)
+E3_activity(355 genes, 5 categories)
+E3_adaptor(395 genes, 1 categories)
- +Cullin_RING(395 genes, 5 categories)
+UBD(136 genes, 4 categories)
+ULD(89 genes, 2 categories)
- +UBL(10 genes, 3 categories)
  - +ATG8(3 genes)
  - +NEDD8(3 genes)
  - +SUMO(4 genes)
- +UDP(79 genes, 2 categories)
  - +UBQ(64 genes, 2 categories)
    - +UBQ_Other(46 genes)
    - +UBQ_PIM(18 genes)
  - +UFD(15 genes, 2 categories)
    - +PB1(6 genes)
    - +UBX(9 genes)