Basic Information
Locus ID:
scaffold104621G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Transport inhibitor response 1-like protein Os04g0395600
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold104621 | 1 | 1510 | - | scaffold104621G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 24,367.91 Da | 48.54 | 79.77 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 5 | 167 | 8.44E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 220 | 1.6E-71 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 104 | 128 | 490.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 129 | 153 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 80 | 103 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 20 | 44 | 23.0 | IPR006553 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_010905567.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Elaeis guineensis] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9Q927 | protein TRANSPORT INHIBITOR RESPONSE 1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105032733 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology