Basic Information
Locus ID:
scaffold066378G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase BRE1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold066378 | 499 | 1822 | - | scaffold066378G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 20,366.17 Da | 52.75 | 76.78 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16499 | RING-HC_BRE1_like | 120 | 161 | 3.82743E-18 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 120 | 164 | 1.5E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 166 | 8.84E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 174 | 2.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 122 | 160 | 1.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 122 | 160 | 10.836942 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 137 | 146 | - | IPR017907 |
| Coils | Coil | Coil | 24 | 119 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55250.2 | histone mono-ubiquitination 2. Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. | 0 |
| RefSeq | XP_010936988.1 | E3 ubiquitin-protein ligase BRE1-like 2 isoform X2 [Elaeis guineensis] | 0 |
| A2ZAC2 | E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica OX=39946 GN=BRE1B PE=3 SV=2 | 0 | |
| TrEMBL | A0A6I9S369 | E3 ubiquitin protein ligase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105056472 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8032 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1454 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023809 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g008490 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29380, Sbi_jg3599 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6356 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000817 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11828, Sgl11985, Sgl15960 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016022, gene:ENSEOMG00000032616 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0011360, CQ.Regalona.r1.1BG0014550 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30054410 |
| Apiaceae | Apium graveolens | 2 | Ag1G02128, Ag9G01397 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G008920, scaffold066378G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712920 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1287.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G13670 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G55250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011229m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g40910.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g001170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2210 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G2315 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g01010 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0014s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g04960, gene.Thate09g21110 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.434 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011535 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07796 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3325, BH01.3731, CH01.3903 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3BG0276090, gene-QOZ80_5AG0363040 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0315690.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_024927 |
| Poaceae | Oryza coarctata | 2 | Oco19G010530, Oco20G007590 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41590.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G324600 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G024220 |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G745800, Tel3E01G748300, Tel3E01G748400 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG066090, gene_TRIDC3AG066320 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G467300.1, TraesCS3A02G469800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb019800_P003 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3445 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1827, evm.TU.LG06.540 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g04770 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1733 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19792 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6364 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22624 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.28 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011964 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5809 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12416 |
| Salicaceae | Populus euphratica | 3 | populus_peu04419, populus_peu35244, populus_peu35245 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626044 |
| Solanaceae | Solanum chilense | 1 | SOLCI004429300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008556 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8660 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2950 |
| Zosteraceae | Zostera marina | 1 | Zosma01g10270.v3.1 |