Basic Information
Locus ID:
scaffold065610G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold065610 | 6912 | 9866 | - | scaffold065610G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 65,334.06 Da | 32.49 | 91.87 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 405 | 587 | 2.86558E-88 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 46 | 207 | 7.31309E-91 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 240 | 352 | 1.6E-20 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 43 | 211 | 2.6E-34 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 450 | 575 | 4.0E-15 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 43 | 219 | 6.95E-44 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 235 | 382 | 5.38E-32 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 405 | 599 | 2.5E-41 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 230 | 392 | 6.7E-42 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 399 | 586 | 7.7E-56 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 40 | 216 | 1.2E-59 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 38 | 599 | 7.8E-210 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_010922580.1 | pyruvate decarboxylase 2 [Elaeis guineensis] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9R928 | pyruvate decarboxylase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105045855 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology