Basic Information
Locus ID:
scaffold052971G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold052971 | 40687 | 69276 | - | scaffold052971G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 64,530.32 Da | 42.51 | 106.89 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16479 | RING-H2_synoviolin | 335 | 380 | 2.21689E-20 | - |
| Pfam | PF13639 | Ring finger domain | 336 | 380 | 5.5E-9 | IPR001841 |
| Pfam | PF02845 | CUE domain | 544 | 578 | 5.2E-7 | IPR003892 |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 386 | 3.81E-18 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 538 | 579 | 3.6E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 311 | 388 | 1.8E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 337 | 380 | 0.0057 | IPR011016 |
| SMART | SM00546 | cue_7 | 540 | 581 | 1.6E-5 | IPR003892 |
| SMART | SM00184 | ring_2 | 338 | 379 | 6.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 338 | 380 | 12.326995 | IPR001841 |
| ProSiteProfiles | PS51140 | CUE domain profile. | 540 | 581 | 13.351969 | IPR003892 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25230.1 | RPM1 interacting protein 2. RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1. | 0 |
| RefSeq | XP_010919530.1 | E3 ubiquitin protein ligase RIN2 isoform X1 [Elaeis guineensis] | 0 |
| Q8VYC8 | E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana OX=3702 GN=RIN2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R4K3 | E3 ubiquitin protein ligase RIN2 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105043621 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14106, jg2414 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16036 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15342, Sbi_jg56160 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26632 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00020243, GOSA_00020244 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02182, Sgl07336 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000001113, gene:ENSEOMG00000030014 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0008700, CQ.Regalona.r1.3BG0008890 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30178730, pistato.v30180990 |
| Apiaceae | Apium graveolens | 1 | Ag6G01700 |
| Arecaceae | Cocos nucifera | 2 | COCNU_10G004040, scaffold052971G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705135, gene-LOC103712148 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3528.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G26303 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G25230.1, AT5G51450.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014220m.g.v1.0, Thhalv10024774m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g13610.v2.2, Sp7g23250.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g081680.2N, BniB03g012850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1981 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2055 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g02090 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g05090 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11444 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2340 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012440 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37600, Lb1G04513, Lb3G20945 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3003, BH03.3171, CH03.3367 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0567330, gene-QOZ80_7BG0598800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0146750.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041317 |
| Poaceae | Oryza coarctata | 2 | Oco13G007320, Oco14G007930 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g30100.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G279500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306547 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr24G007210, Chr27G010860, Chr28G006590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G421700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG031260, gene_TRIDC2BG035690 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G227400.2, TraesCS2B02G255300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105020_P001, Zm00001eb321470_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1026, nbis-gene-38451 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5149, Zma_g6435 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1506 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g03940 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.233 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29115 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6861 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2061 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.148 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001249 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2422 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6180 |
| Salicaceae | Populus euphratica | 3 | populus_peu03364, populus_peu34212, populus_peu34213 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132638901 |
| Solanaceae | Solanum chilense | 1 | SOLCI004049200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023515 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4096 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2000 |
| Zosteraceae | Zostera marina | 2 | Zosma02g05590.v3.1, Zosma06g03640.v3.1 |