Basic Information
Locus ID:
scaffold032126G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold032126 | 25662 | 26606 | - | scaffold032126G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 33,163.60 Da | 57.33 | 87.04 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 95 | 138 | 1.7383E-17 | - |
| Pfam | PF13639 | Ring finger domain | 95 | 138 | 2.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 144 | 7.07E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 143 | 1.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 96 | 137 | 9.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 138 | 12.666314 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010939844.1 | RING-H2 finger protein ATL3 [Elaeis guineensis] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9S9B4 | RING-H2 finger protein ATL3 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105058579 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology