Basic Information
Locus ID:
scaffold030856G000040
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold030856 | 20655 | 29977 | - | scaffold030856G000040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 163,712.39 Da | 38.18 | 99.84 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 606 | 806 | 4.03208E-110 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1228 | 1448 | 1.1403E-120 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 917 | 1205 | 1.3462E-88 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 293 | 580 | 2.34587E-91 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1248 | 1395 | 3.0E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 922 | 1161 | 1.6E-29 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 295 | 559 | 2.3E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 624 | 758 | 4.6E-21 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 603 | 828 | 2.01E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1222 | 1463 | 5.23E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 283 | 580 | 3.66E-32 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 904 | 1211 | 2.88E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1214 | 1466 | 7.2E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 881 | 1211 | 1.5E-58 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 274 | 588 | 1.5E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 593 | 840 | 6.2E-75 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1256 | 1441 | 1.3E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 633 | 806 | 5.7E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 919 | 1162 | 33.39809 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1230 | 1464 | 17.600506 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 606 | 829 | 22.862585 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 292 | 572 | 32.340912 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 731 | 745 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 864 | 878 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 852 | 891 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_010914891.1 | ABC transporter C family member 3 [Elaeis guineensis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QTI4 | ABC transporter C family member 3 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105040178 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology