Basic Information
Locus ID:
scaffold024094G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Protein tyrosine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold024094 | 88429 | 90264 | + | scaffold024094G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 65,538.00 Da | 41.27 | 91.19 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 309 | 575 | 2.40459E-87 | - |
| Pfam | PF19160 | SPARK | 2 | 155 | 2.1E-9 | IPR043891 |
| Pfam | PF00069 | Protein kinase domain | 308 | 569 | 1.2E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 283 | 572 | 1.75E-69 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 377 | 585 | 4.8E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 264 | 376 | 2.4E-26 | - |
| SMART | SM00220 | serkin_6 | 303 | 577 | 1.6E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 303 | 576 | 35.933586 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 418 | 430 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24550.1 | proline extensin-like receptor kinase 1. encodes an ortholog of Brassica napus proline extensin-like receptor kinase. Expression of the brassica gene is induced by wounding and fungal infection. | 0 |
| RefSeq | XP_010922820.1 | proline-rich receptor-like protein kinase PERK3 [Elaeis guineensis] | 0 |
| Q9LV48 | Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana OX=3702 GN=PERK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R8Y3 | proline-rich receptor-like protein kinase PERK3 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105046036 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold024094G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717896 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g29490 |
| Poaceae | Oryza coarctata | 1 | Oco14G004500 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g12480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G104200 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G003910, Chr28G003360 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49353 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4928 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27770 |