Basic Information
Locus ID:
scaffold023260G000050
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold023260 | 106621 | 109468 | + | scaffold023260G000050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 24,457.08 Da | 36.14 | 68.26 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 158 | 236 | 6.3E-38 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 165 | 236 | 2.11E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 153 | 236 | 2.3E-24 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 147 | 236 | 18.033884 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 71 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_010917562.1 | auxin-responsive protein IAA27 [Elaeis guineensis] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R495 | Auxin-responsive protein OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042147 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology