Basic Information
Locus ID:
scaffold023055G000040
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold023055 | 52906 | 94500 | - | scaffold023055G000040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 95,533.77 Da | 46.13 | 84.07 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 1 | 131 | 2.50388E-48 | - |
| CDD | cd18794 | SF2_C_RecQ | 132 | 267 | 4.91594E-54 | - |
| Pfam | PF14493 | Helix-turn-helix domain | 599 | 692 | 8.2E-20 | IPR029491 |
| Pfam | PF00570 | HRDC domain | 481 | 547 | 2.3E-17 | IPR002121 |
| Pfam | PF09382 | RQC domain | 335 | 430 | 1.6E-23 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 270 | 331 | 7.4E-12 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 156 | 257 | 3.0E-20 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 123 | 6.14E-14 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 476 | 556 | 3.92E-18 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 130 | 381 | 2.88E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 130 | 1.0E-39 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 476 | 553 | 3.0E-19 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 333 | 456 | 1.5E-33 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 132 | 332 | 3.7E-58 | IPR027417 |
| SMART | SM00341 | hrdc7 | 477 | 557 | 5.4E-10 | IPR002121 |
| SMART | SM00956 | RQC_2 | 338 | 442 | 2.8E-27 | IPR018982 |
| SMART | SM00490 | helicmild6 | 177 | 258 | 4.7E-29 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 1 | 390 | 5.5E-118 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 124 | 15.073736 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 148 | 303 | 20.124149 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 477 | 557 | 20.96711 | IPR002121 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.2 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_019706458.1 | uncharacterized protein LOC105045099 [Elaeis guineensis] | 0 |
| O34748 | ATP-dependent DNA helicase RecQ OS=Bacillus subtilis (strain 168) OX=224308 GN=recQ PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0PKM5 | ATP-dependent DNA helicase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105045099 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology