Basic Information
Locus ID:
scaffold021460G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold021460 | 82864 | 89365 | + | scaffold021460G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 113,263.04 Da | 49.66 | 105.86 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 266 | 307 | 4.06806E-21 | - |
| Pfam | PF04564 | U-box domain | 266 | 332 | 5.1E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 336 | 1017 | 2.66E-39 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 335 | 2.16E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 241 | 334 | 2.7E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 653 | 878 | 3.9E-25 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 435 | 643 | 9.6E-23 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 890 | 1025 | 6.4E-13 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 335 | 434 | 2.0E-10 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 265 | 328 | 3.0E-24 | IPR003613 |
| SMART | SM00185 | arm_5 | 551 | 591 | 7.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 449 | 490 | 250.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 772 | 818 | 41.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 821 | 861 | 60.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 408 | 448 | 42.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 895 | 935 | 11.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 729 | 770 | 94.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 592 | 635 | 1.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 366 | 406 | 10.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 939 | 979 | 22.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 261 | 335 | 30.386745 | IPR003613 |
| Coils | Coil | Coil | 349 | 376 | - | - |
| Coils | Coil | Coil | 140 | 160 | - | - |
| Coils | Coil | Coil | 196 | 223 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_019709694.1 | U-box domain-containing protein 44 isoform X2 [Elaeis guineensis] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0PPZ9 | RING-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105054624 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |