Basic Information
Locus ID:
scaffold021020G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold021020 | 2060 | 9928 | - | scaffold021020G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 21,091.37 Da | 61.73 | 69.68 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14273 | UBA_TAP-C_like | 17 | 48 | 8.42346E-8 | - |
| Pfam | PF14555 | UBA-like domain | 14 | 49 | 3.4E-10 | - |
| Pfam | PF00789 | UBX domain | 158 | 184 | 4.8E-6 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 150 | 184 | 3.1E-7 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 9 | 49 | 4.59E-5 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 96 | 187 | 9.4E-6 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 5 | 55 | 7.3E-9 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 156 | 189 | 12.179883 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 189 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14570.3 | UBX domain-containing protein. | 0 |
| RefSeq | XP_029118195.1 | plant UBX domain-containing protein 7-like, partial [Elaeis guineensis] | 0 |
| Q94JZ8 | Plant UBX domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=PUX7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8N4ESM0 | plant UBX domain-containing protein 7-like OS=Elaeis guineensis var. tenera OX=51953 GN=LOC109505387 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold021020G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106832 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp6g06930.v2.2, Sp7g12220.v2.2, Sp7g12230.v2.2 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6149 |