Basic Information
Locus ID:
scaffold020636G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold020636 | 5780 | 8196 | - | scaffold020636G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 50,785.34 Da | 25.67 | 90.00 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12854 | PPR repeat | 74 | 101 | 1.8E-6 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 40 | 71 | 2.0E-11 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 319 | 348 | 6.0E-8 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 5 | 37 | 3.6E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 354 | 403 | 2.0E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 179 | 228 | 4.8E-18 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 147 | 177 | 0.001 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 296 | 316 | 0.18 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 256 | 280 | 1.1E-4 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 260 | 421 | 6.54E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 209 | 282 | 8.3E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 73 | 137 | 8.2E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 72 | 2.2E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 138 | 208 | 7.8E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 287 | 458 | 1.5E-39 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 256 | 280 | 1.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 77 | 111 | 2.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 323 | 354 | 3.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 147 | 181 | 1.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 183 | 215 | 2.8E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 218 | 245 | 9.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 12 | 44 | 1.3E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 46 | 71 | 2.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 358 | 390 | 5.5E-11 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 394 | 425 | 1.0E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 145 | 179 | 11.454616 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 44 | 74 | 9.97484 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 390 | 424 | 10.89559 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 180 | 214 | 14.43609 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 355 | 389 | 13.252269 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 320 | 354 | 11.070971 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 9 | 43 | 12.035565 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 252 | 282 | 9.163705 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 75 | 109 | 9.96388 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 215 | 245 | 8.70333 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17525.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_010918335.1 | LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g17525, mitochondrial [Elaeis guineensis] | 0 |
| Q84VG6 | Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g17525 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9R247 | LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042732 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34662 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6497 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018177 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15202, Sbi_jg56024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26503 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027749 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02222, Sgl07378 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000030064, gene:ENSEOMG00000045211 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009180, CQ.Regalona.r1.3BG0009360 |
| Apiaceae | Apium graveolens | 1 | Ag3G01768 |
| Arecaceae | Cocos nucifera | 1 | scaffold020636G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120103774 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.429.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22357 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G17525.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022597m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30890.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g065500.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0723 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08310 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g13010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2888 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013333 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb8G36056, Lb8G36059 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1654, evm.TU.LG11.1007 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2202 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16939 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5957 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11639 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.559 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008315 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23116 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23702 |
| Salicaceae | Populus euphratica | 1 | populus_peu14041 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610154 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031224 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25127_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0871 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23520.v3.1 |