Basic Information
Locus ID:
scaffold020587G000030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold020587 | 64464 | 64961 | - | scaffold020587G000030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 18,186.07 Da | 36.23 | 82.36 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 94 | 156 | 4.66244E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 18 | 79 | 2.5E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 92 | 155 | 4.4E-16 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 8 | 156 | 2.44E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 85 | 161 | 9.6E-25 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 84 | 5.0E-23 | - |
| SMART | SM00054 | efh_1 | 18 | 46 | 6.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 54 | 82 | 0.013 | IPR002048 |
| SMART | SM00054 | efh_1 | 94 | 122 | 2.0E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 130 | 158 | 2.9E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 90 | 125 | 15.629221 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 126 | 161 | 13.676544 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 14 | 49 | 14.84815 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 50 | 85 | 10.775421 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 63 | 75 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 139 | 151 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 103 | 115 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 27 | 39 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_010919971.1 | probable calcium-binding protein CML18 [Elaeis guineensis] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9R5G4 | probable calcium-binding protein CML18 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105043942 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology