Basic Information
Locus ID:
scaffold020585G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold020585 | 37736 | 39156 | - | scaffold020585G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 43,872.51 Da | 47.89 | 78.41 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 314 | 354 | 3.2E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 51 | 113 | 3.49E-5 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 311 | 358 | 5.93E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 120 | 239 | 1.96E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 302 | 358 | 8.6E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 104 | 259 | 3.5E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 312 | 354 | 11.049573 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_008805330.1 | F-box protein At1g67340-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CSG7 | F-box protein At1g67340-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103718331 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology